Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes
Wade Abbott
(1)
,
Orly Alber
(2)
,
Ed Bayer
(2)
,
Jean-Guy Berrin
(3)
,
Alisdair Boraston
(4)
,
Harry Brumer
(5)
,
Ryszard Brzezinski
(6)
,
Anthony Clarke
(7)
,
Beatrice Cobucci-Ponzano
(8)
,
Darrell Cockburn
(9)
,
Pedro Coutinho
(10)
,
Mirjam Czjzek
(11, 12)
,
Bareket Dassa
(2)
,
Gideon John Davies
(13)
,
Vincent Eijsink
(14)
,
Jens Eklof
(5)
,
Alfons Felice
(15)
,
Elizabeth Ficko-Blean
(11, 12)
,
Geoff Pincher
(16)
,
Thierry Fontaine
(17)
,
Zui Fujimoto
(18)
,
Kiyotaka Fujita
(19)
,
Shinya Fushinobu
(20)
,
Harry Gilbert
(21)
,
Tracey Gloster
(22)
,
Ethan Goddard-Borger
(23)
,
Ian Greig
(24)
,
Jan-Hendrik Hehemann
(25)
,
Glyn Hemsworth
(26)
,
Bernard Henrissat
(11, 12)
,
Masafumi Hidaka
(20)
,
Ramon Hurtado-Guerrero
(27)
,
Kiyohiko Igarashi
(20)
,
Takuya Ishida
(20)
,
Stefan Janecek
(28)
,
Seino Jongkees
(20)
,
Nathalie Juge
(29)
,
Satoshi Kaneko
(30)
,
Takane Katayama
(31)
,
Motomitsu Kitaoka
(18)
,
Naotake Konno
(32)
,
Daniel Kracher
(15)
,
Anna Kulminskaya
(33)
,
Alicia Lammerts van Bueren
(34)
,
Sine Larsen
(34)
,
Junho Lee
(5)
,
Markus Linder
(35)
,
Leila Loleggio
(36)
,
Roland Ludwig
(15)
,
Ana Luis
(37)
,
Mirko Maksimainen
(38)
,
Brian Mark
(39)
,
Richard Mclean
(40)
,
Gurvan Michel
(11, 12)
,
Cédric Montanier
(3)
,
Marco Moracci
(8)
,
Haruhide Mori
(41)
,
Hiroyuki Nakai
(42)
,
Wim Nerinckx
(43)
,
Takayuki Ohnuma
(44)
,
Richard Pickersgill
(45)
,
Kathleen Piens
(46)
,
Tirso Pons
(47)
,
Etienne Rebuffet
(48)
,
Peter Reilly
(49)
,
Magali Remaud Simeon
(50)
,
Brian Rempel
(5)
,
Kyle Robinson
(5)
,
David Rose
(51)
,
Juha Rouvinen
(52)
,
Wataru Saburi
(41)
,
Yuichi Sakamoto
(53)
,
Mats Sandgren
(46)
,
Fathima Shaikh
(5)
,
Yuval Shoham
(54)
,
Franz St John
(55)
,
Jerry Stahlberg
(46)
,
Michael Suits
(56)
,
Gerlind Sulzenbacher
(57, 10, 58)
,
Tomomi Sumida
(59)
,
Ryuichiro Suzuki
(60)
,
Birte Svensson
(61)
,
Toki Taira
(30)
,
Ed Taylor
(62)
,
Takashi Tonozuka
(63)
,
Breeanna Urbanowicz
(64)
,
Gustav Vaaje-Kolstad
(14)
,
Wim van den Ende
(65)
,
Annabelle Varrot
(66, 67)
,
Maxime Versluys
(65)
,
Florence Vincent
(10, 58, 68)
,
David Vocadlo
(24)
,
Warren Wakarchuk
(69)
,
Tom Wennekes
(70)
,
Rohan Williams
(71)
,
Spencer Williams
(71)
,
David Wilson
(72)
,
Stephen Withers
(5)
,
Katsuro Yaoi
(73)
,
Vivian Yip
(5)
,
Ran Zhang
(5)
1
AAFC -
Agriculture and Agri-Food
2 Weizmann Institute of Science [Rehovot, Israël]
3 LISBP - Laboratoire d'Ingénierie des Systèmes Biologiques et des Procédés
4 UVIC - University of Victoria [Canada]
5 University of British Columbia
6 UdeS - Université de Sherbrooke
7 University of Guelph
8 CNR - National Research Council
9 Penn State - Pennsylvania State University
10 AMU - Aix Marseille Université
11 LBI2M - Laboratoire de Biologie Intégrative des Modèles Marins
12 SU - Sorbonne Université
13 University of York
14 NMBU - Norwegian University of Life Sciences
15 University of Vienna [Vienna]
16 University of Adelaide
17 IP - Institut Pasteur [Paris]
18 NARO - National Agriculture and Food Research Organization
19 Kagoshima University
20 UTokyo - The University of Tokyo
21 Newcastle University
22 University of St Andrews [Scotland]
23 WEHI - The Walter and Eliza Hall Institute of Medical Research
24 SFU.ca - Simon Fraser University = Université Simon Fraser
25 Max Planck Institute for Marine Microbiology
26 University of Leeds
27 University of Zaragoza - Universidad de Zaragoza [Zaragoza]
28 SAS - Slovak Academy of Sciences
29 Quadram Institute
30 University of the Ryukyus [Okinawa]
31 Ishikawa Prefectural University
32 Utsunomiya University [Utsunomiya]
33 St Petersburg Nuclear Physics Institute
34 University of Groningen [Groningen]
35 Aalto University
36 UCPH - University of Copenhagen = Københavns Universitet
37 ULISBOA - Universidade de Lisboa = University of Lisbon
38 University of Oulu
39 University of Manitoba [Winnipeg]
40 University of Lethbridge
41 Hokkaido University [Sapporo, Japan]
42 Niigata University
43 UGENT - Universiteit Gent = Ghent University
44 Kinki University
45 QMUL - Queen Mary University of London
46 Sveriges lantbruksuniversitet
47 National Center for Biotechnology
48 CRCM - Centre de Recherche en Cancérologie de Marseille
49 ISU - Iowa State University
50 INSA Toulouse - Institut National des Sciences Appliquées - Toulouse
51 University of Waterloo [Waterloo]
52 University of Eastern Finland
53 IBRC - Iwate Biotechnology Research Center
54 Technion - Israel Institute of Technology [Haifa]
55 United States Department of Agriculture
56 WLU - Wilfrid Laurier University
57 AFMB - Architecture et fonction des macromolécules biologiques
58 INRA - Institut National de la Recherche Agronomique
59 RIKEN - RIKEN - Institute of Physical and Chemical Research [Japon]
60 Akita University
61 DTU - Danmarks Tekniske Universitet = Technical University of Denmark
62 University of Lincoln [UK]
63 TUAT - Tokyo University of Agriculture and Technology
64 University of Georgia [USA]
65 UCL - Université Catholique de Louvain = Catholic University of Louvain
66 CERMAV - Centre de Recherches sur les Macromolécules Végétales
67 UGA [2016-2019] - Université Grenoble Alpes [2016-2019]
68 AFMB - Architecture et fonction des macromolécules biologiques
69 Ryerson University
70 Universiteit Utrecht / Utrecht University [Utrecht]
71 University of Melbourne
72 Cornell University [New York]
73 AIST - National Institute of Advanced Industrial Science and Technology
2 Weizmann Institute of Science [Rehovot, Israël]
3 LISBP - Laboratoire d'Ingénierie des Systèmes Biologiques et des Procédés
4 UVIC - University of Victoria [Canada]
5 University of British Columbia
6 UdeS - Université de Sherbrooke
7 University of Guelph
8 CNR - National Research Council
9 Penn State - Pennsylvania State University
10 AMU - Aix Marseille Université
11 LBI2M - Laboratoire de Biologie Intégrative des Modèles Marins
12 SU - Sorbonne Université
13 University of York
14 NMBU - Norwegian University of Life Sciences
15 University of Vienna [Vienna]
16 University of Adelaide
17 IP - Institut Pasteur [Paris]
18 NARO - National Agriculture and Food Research Organization
19 Kagoshima University
20 UTokyo - The University of Tokyo
21 Newcastle University
22 University of St Andrews [Scotland]
23 WEHI - The Walter and Eliza Hall Institute of Medical Research
24 SFU.ca - Simon Fraser University = Université Simon Fraser
25 Max Planck Institute for Marine Microbiology
26 University of Leeds
27 University of Zaragoza - Universidad de Zaragoza [Zaragoza]
28 SAS - Slovak Academy of Sciences
29 Quadram Institute
30 University of the Ryukyus [Okinawa]
31 Ishikawa Prefectural University
32 Utsunomiya University [Utsunomiya]
33 St Petersburg Nuclear Physics Institute
34 University of Groningen [Groningen]
35 Aalto University
36 UCPH - University of Copenhagen = Københavns Universitet
37 ULISBOA - Universidade de Lisboa = University of Lisbon
38 University of Oulu
39 University of Manitoba [Winnipeg]
40 University of Lethbridge
41 Hokkaido University [Sapporo, Japan]
42 Niigata University
43 UGENT - Universiteit Gent = Ghent University
44 Kinki University
45 QMUL - Queen Mary University of London
46 Sveriges lantbruksuniversitet
47 National Center for Biotechnology
48 CRCM - Centre de Recherche en Cancérologie de Marseille
49 ISU - Iowa State University
50 INSA Toulouse - Institut National des Sciences Appliquées - Toulouse
51 University of Waterloo [Waterloo]
52 University of Eastern Finland
53 IBRC - Iwate Biotechnology Research Center
54 Technion - Israel Institute of Technology [Haifa]
55 United States Department of Agriculture
56 WLU - Wilfrid Laurier University
57 AFMB - Architecture et fonction des macromolécules biologiques
58 INRA - Institut National de la Recherche Agronomique
59 RIKEN - RIKEN - Institute of Physical and Chemical Research [Japon]
60 Akita University
61 DTU - Danmarks Tekniske Universitet = Technical University of Denmark
62 University of Lincoln [UK]
63 TUAT - Tokyo University of Agriculture and Technology
64 University of Georgia [USA]
65 UCL - Université Catholique de Louvain = Catholic University of Louvain
66 CERMAV - Centre de Recherches sur les Macromolécules Végétales
67 UGA [2016-2019] - Université Grenoble Alpes [2016-2019]
68 AFMB - Architecture et fonction des macromolécules biologiques
69 Ryerson University
70 Universiteit Utrecht / Utrecht University [Utrecht]
71 University of Melbourne
72 Cornell University [New York]
73 AIST - National Institute of Advanced Industrial Science and Technology
Jean-Guy Berrin
- Fonction : Auteur
- PersonId : 775016
- IdHAL : jean-guy-berrin
- ORCID : 0000-0001-7570-3745
- IdRef : 072289244
Harry Brumer
- Fonction : Auteur
- PersonId : 763469
- ORCID : 0000-0002-0101-862X
Beatrice Cobucci-Ponzano
- Fonction : Auteur
- PersonId : 791670
- ORCID : 0000-0002-8211-2297
Mirjam Czjzek
- Fonction : Auteur
- PersonId : 3511
- IdHAL : mirjam-czjzek
- ORCID : 0000-0002-7483-2841
- IdRef : 145158225
Elizabeth Ficko-Blean
- Fonction : Auteur
- PersonId : 739901
- IdHAL : elizabeth-ficko-blean
- IdRef : 253136695
Thierry Fontaine
- Fonction : Auteur
- PersonId : 746556
- IdHAL : thierryfontaine
- ORCID : 0000-0002-8184-789X
- IdRef : 183524004
Bernard Henrissat
- Fonction : Auteur
- PersonId : 833340
Sine Larsen
- Fonction : Auteur
- PersonId : 762577
- ORCID : 0000-0003-3848-1789
Gurvan Michel
- Fonction : Auteur
- PersonId : 1176853
- IdHAL : gurvan-michel
- ORCID : 0000-0002-3009-6205
Cédric Montanier
- Fonction : Auteur
- PersonId : 1155910
- IdHAL : cedric-montanier
- ORCID : 0000-0002-8205-7160
Marco Moracci
- Fonction : Auteur
- PersonId : 791672
- ORCID : 0000-0002-9846-2531
Etienne Rebuffet
- Fonction : Auteur
- PersonId : 753077
- IdHAL : rebuffet-etienne
- ORCID : 0000-0001-5192-907X
- IdRef : 145157199
Magali Remaud Simeon
- Fonction : Auteur
- PersonId : 1182089
Gerlind Sulzenbacher
- Fonction : Auteur
- PersonId : 749515
- IdHAL : gerlind-sulzenbacher
Wim van den Ende
- Fonction : Auteur
- PersonId : 967881
Annabelle Varrot
- Fonction : Auteur
- PersonId : 21417
- IdHAL : annabelle-varrot
- ORCID : 0000-0001-6667-8162
- IdRef : 138538808
Florence Vincent
- Fonction : Auteur
- PersonId : 742136
- IdHAL : florence-vincent
- ORCID : 0000-0002-8564-4184
- IdRef : 067202063
Ran Zhang
- Fonction : Auteur
- PersonId : 791759
- ORCID : 0000-0002-7248-1291
Résumé
CAZypedia was initiated in 2007 to create a comprehensive, living encyclopedia of the carbohydrate active enzymes (CAZymes) and associated carbohydrate-binding modules involved in the synthesis, modification and degradation of complex carbohydrates. CAZypedia is closely connected with the actively curated CAZy database, which provides a sequence-based foundation for the biochemical, mechanistic and structural characterization of these diverse proteins. Now celebrating its 10th anniversary online, CAZypedia is a successful example of dynamic, community-driven and expert-based biocuration. CAZypedia is an open-access resource available at URL http://www.cazypedia.org.
Origine : Fichiers éditeurs autorisés sur une archive ouverte
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