BioMart Central Portal: an open database network for the biological community
Jonathan M. Guberman
(1)
,
J. Ai
(2)
,
O. Arnaiz
(3)
,
Baran Joachim
(1)
,
Andrew Blake
(4)
,
Richard Baldock
(5)
,
Claude Chelala
(6)
,
David Croft
(7)
,
Anthony Cros
(1)
,
Rosalind J. Cutts
(6)
,
A. Di Génova
(8)
,
Simon Forbes
(9)
,
T. Fujisawa
(10)
,
E. Gadaleta
(6)
,
M. Goodstein D.
(11, 12)
,
Gunes Gundem
(13)
,
Bernard Haggarty
(5)
,
Syed Haider
(14)
,
Matthew D. Hall
(15)
,
Todd Harris
(16)
,
Robin Haw
(1)
,
S. Hu
(2)
,
Simon Hubbard
(17)
,
Jack Hsu
(1)
,
Vivek Iyer
(18)
,
Philip Jones
(7)
,
Toshiaki Katayama
(19)
,
R. Kinsella
(7)
,
Lei Kong
(20)
,
Daniel Lawson
(7)
,
Yong Liang
(1)
,
Núria López-Bigas
(13)
,
J. Luo
(7)
,
Michael Lush
(7)
,
Jeremy Mason
(15)
,
François Moreews
(21, 22)
,
Nelson Ndegwa
(7)
,
Darren Oakley
(18)
,
Christian Perez-Llamas
(13)
,
Michael Primig
(23)
,
Elena Rivkin
(1)
,
S. Rosanoff
(7)
,
Rebecca Shepherd
(9)
,
Reinhard Simon
(24)
,
B. Skarnes
(18)
,
Damian Smedley
(7)
,
Linda Sperling
(3)
,
William Spooner
(16, 25)
,
Peter Stevenson
(5)
,
Kevin Stone
(15)
,
J. Teague
(9)
,
Jun Wang
(20)
,
Jianxin Wang
(1)
,
Brett Whitty
(1)
,
T. Wong D.
(2)
,
Marie Wong-Erasmus
(1)
,
L. Yao
(1)
,
Ken Youens-Clark
(16)
,
Christina Yung
(1)
,
Junjun Zhang
(1)
,
Arek Kasprzyk
(1)
1
OICR -
Ontario Institute for Cancer Research [Canada]
2 School of Dentistry and Dental Research Institute [UCLA]
3 CGM - Centre de génétique moléculaire
4 MRC Harwell - Medical Research Coucil Harwell [Oxford, UK]
5 MRC Human Genetics Unit
6 Centre for Molecular Oncology and Imaging
7 EMBL-EBI - European Bioinformatics Institute [Hinxton]
8 CMM - Center for Mathematical Modeling
9 Cancer Genome Project
10 Kasuza DNA Research Institute
11 DOE Joint Genome Institute [Walnut Creek]
12 Genomics Division [LBNL Berkeley]
13 GRIB - Research Unit on Biomedical Informatics
14 Computer Laboratory [Cambridge]
15 MGI - Mouse Genomic Informatics Group
16 CSHL - Cold Spring Harbor Laboratory
17 Faculty of Life Sciences [Manchester]
18 The Wellcome Trust Sanger Institute [Cambridge]
19 UTokyo - The University of Tokyo
20 Center for Bioinformatics [Peking]
21 SYMBIOSE - Biological systems and models, bioinformatics and sequences
22 SIGENAE - Système d'Information des GENomes des Animaux d'Elevage
23 GERHM - Groupe d'Etude de la Reproduction Chez l'Homme et les Mammiferes
24 CIP - International Potato Center [Lima]
25 Eagle Genomics Ltd
2 School of Dentistry and Dental Research Institute [UCLA]
3 CGM - Centre de génétique moléculaire
4 MRC Harwell - Medical Research Coucil Harwell [Oxford, UK]
5 MRC Human Genetics Unit
6 Centre for Molecular Oncology and Imaging
7 EMBL-EBI - European Bioinformatics Institute [Hinxton]
8 CMM - Center for Mathematical Modeling
9 Cancer Genome Project
10 Kasuza DNA Research Institute
11 DOE Joint Genome Institute [Walnut Creek]
12 Genomics Division [LBNL Berkeley]
13 GRIB - Research Unit on Biomedical Informatics
14 Computer Laboratory [Cambridge]
15 MGI - Mouse Genomic Informatics Group
16 CSHL - Cold Spring Harbor Laboratory
17 Faculty of Life Sciences [Manchester]
18 The Wellcome Trust Sanger Institute [Cambridge]
19 UTokyo - The University of Tokyo
20 Center for Bioinformatics [Peking]
21 SYMBIOSE - Biological systems and models, bioinformatics and sequences
22 SIGENAE - Système d'Information des GENomes des Animaux d'Elevage
23 GERHM - Groupe d'Etude de la Reproduction Chez l'Homme et les Mammiferes
24 CIP - International Potato Center [Lima]
25 Eagle Genomics Ltd
Robin Haw
- Fonction : Auteur
- PersonId : 765081
- ORCID : 0000-0002-2013-7835
S. Hu
- Fonction : Auteur
- PersonId : 756616
- ORCID : 0000-0003-2465-3818
Jeremy Mason
- Fonction : Auteur
- PersonId : 765082
- ORCID : 0000-0002-2796-5123
François Moreews
- Fonction : Auteur
- PersonId : 748874
- IdHAL : francois-moreews
- ORCID : 0000-0002-4168-4459
- IdRef : 192464035
Michael Primig
- Fonction : Auteur
- PersonId : 879012
- ORCID : 0000-0002-2061-0119
Arek Kasprzyk
Connectez-vous pour contacter l'auteur
- Fonction : Auteur correspondant
- PersonId : 947533
Connectez-vous pour contacter l'auteur
Résumé
BioMart Central Portal is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. Anybody can contribute an independently maintained resource to the Central Portal, allowing it to be exposed to and shared with the research community, and linking it with the other resources in the portal. Users can take advantage of the common interface to quickly utilize different sources without learning a new system for each. The system also simplifies cross-database searches that might otherwise require several complicated steps. Several integrated tools streamline common tasks, such as converting between ID formats and retrieving sequences. The combination of a wide variety of databases, an easy-to-use interface, robust programmatic access and the array of tools make Central Portal a one-stop shop for biological data querying. Here, we describe the structure of Central Portal and show example queries to demonstrate its capabilities. Database URL: http://central.biomart.org.
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